| |
Sunday 12 |
Monday 13 |
Tuesday 14 |
Wednesday 15 |
Thursday 16 |
Friday 17 |
Saturday 18 |
| 8:00 |
Travel |
Breakfast |
Breakfast |
Breakfast |
Breakfast |
Cultural Excursion "The Old Capital of Ayutthaya" |
Breakfast |
| 9:00 |
Welcome (15 min), NSTDA welcome (Sissades, 15 min), Thai culture (30 min) |
Intro to Virtual Screening (Amit) |
Intro to MD (Charlie) |
Intro to genomics (20 min); Genome assembly (Nik/Jeremy) |
Pathway/Network/Go analysis (Asif); RNA Seq (DEG; Asif) |
| 10:00 |
NSTDA campus (30 min), XSEDE accounts (30 min) |
Intro to a drug screening pipeline |
Intro Force fields (Sudip) |
Genome assembly (cont.) |
MSA and phylogeny inference (Travis) |
| 11:00 |
Split into MD, Genomics, and Modeling groups to determine needs |
Run your own drug screening pipeline |
Run your own MD simulation (for those with little/no MD experience) Travis/Ayesha |
Gene annotation (Jeremy/Travis) |
Major/minor project |
| 12:00 |
Lunch |
Lunch |
Lunch |
Lunch |
Lunch |
| 13:00 |
| 14:00 |
Identify sub-groups that can work and learn together |
Run your own drug screening pipeline (cont.) |
Run your own MD simulation (cont.) |
Variant Annotation (Jeremy); Pathway/Network/Go analysis (Asif) |
Sub-group work on Major projects |
| 15:00 |
Intro to machine learning |
Sub-group work on Major projects or run your own virtual screening/drug design (Sudip) |
Sub-group work on Major projects |
| 16:00 |
Pick up an information packet and register at Dluxx Hotel lobby |
Run your own secondary structure prediction |
| 17:00 |
| 18:00 |
| 18:30 |
Dinner Dluxx lobby |
Dinner conference center |
Dinner conference center/Students present their research problem |
Dinner conference center/Students present their research problem |
| 19:00 |
| 20:00+ |
conference center closed for the night |
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